Department of Microbiology & Parasitology

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Department of Microbiology & Parasitology has more than 13 academic staff members

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Prof.Dr. Salah Mohamed Mohamed Azwai

صلاح الزوي هو احد اعضاء هيئة التدريس بقسم الاحياء الدقيقة والطفليات بكلية الطب البيطري. يعمل السيد صلاح الزوي بجامعة طرابلس كـأستاذ منذ 2005-02-13 وله العديد من المنشورات العلمية في مجال تخصصه

Publications

Some of publications in Department of Microbiology & Parasitology

Isolation and Molecular Identification of Vibrio spp. by Sequencing of 16S rDNA from Seafood, Meat and Meat Products in Libya: A Descriptive Study

The main objective of this study was to characterize bacteria isolated from seafood, meat and meat products that may cause foodborne illnesses. We plan to use this data to help create a baseline for future research into foodborne illness in Libya. Several food-borne organisms in the genus Vibrio produce a variety of clinical disorders, including septicemia, cholera, and milder types of gastroenteritis. Vibrio cholerae, Vibrio parahemolyticus, and Vibrio vulnificus are among the Vibrio spp. that are usually related with food-borne transmission. A total of 93 samples (Table 1) of seafood, meat and meat products that includes 21 of shrimps; 5 of clam; 20 of fish; 34 samples of raw meat (10 beef, 9 camel meat, 6 mutton and 9 chickens) and 13 samples of meat products (2 beef sausages, 5 beef burgers, 5 chicken burgers and 1 kebab) were randomly collected from different geographic localities in Libya [Tripoli, Regdalin (120 km west of Tripoli), Janzour (30 km west of Tripoli) and Tobruk (1400 km east of Tripoli)]. Each sample was 250 g in weight. Out of the 93 cultured samples only 48 (51.6%) yielded colonies on Thiosulfate Citrate Bile Salt agar (TCBS) with culture characteristics of Vibrio spp. More than half (n=27) of processed seafood samples (n=46) yielded colonies on TCBS, while only 44.6% of samples of meat and meat products showed colonies on TCBS. Among cultured seafood samples, the highest bacterial count was recorded in clam with a count of 3.8 х10 4 CFU\g. Chicken burger samples showed the highest bacterial count with 6.5 х10 4 CFU\g. Molecular analysis of the isolates obtained in this study, showed that 11 samples out of 48 (22.9%) were Vibrio spp. Vibrio parahemolyticus was isolated from camel meat for the
Salah M. Azwai(1-2022)
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PATHOLOGY OF GOUT IN GROWING LAYERS ATTRIBUTED TO HIGH CALCIUM AND PROTEIN DIET

An outbreak of gout was investigated in a growing layers farm of 45000 birds located in Tripoli, Libya. Mortality was commenced at 39 days-old reaching to a total of 489 birds within 10 days. Post mortem was conducted and kidney tissue samples were fixed in 10% neutral formalin prior to processing. Feed samples were sent to the Animal Nutrition Department for analysis which revealed 23.47% crude protein and 3.5% calcium. Gross lesions comprised of deposition of chalky white material covering the pericardium and enlarged kidneys with necrotic foci, hemorrhage and nephrosis. Most of birds showed swollen ureter of one or both sides. Histopathologically, severe damage of tubules characterized by moderate to severe tubular dilation and necrosis and central bluish gouty deposition surrounded by radiations of needle like urate crystals followed by granulomatous reaction of lymphocytes, macrophages and fibroblasts. The collecting renal tubules, urinephric ducts and ureters were also filled by gouty deposits with epithelial hyperplastic changes and chronic inflammatory cellular reaction in their walls. The interstitial tissue showed edema, congestion, hemorrhage and lymphomononuclear cell infiltration. This gout outbreak in growing layers is attributed to high concentration of crude protein and calcium in diet.
Ibrahim Eldaghayes(1-2010)
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Whole Genome Sequence Analysis of the First Vancomycin-Resistant Enterococcus faecium Isolates from a Libyan Hospital in Tripoli

Abstract The purpose of the study was to investigate the molecular characteristics and genetic relatedness of the first reported cases of vancomycin-resistant enterococci (VRE) from the Tripoli Medical Center, Libya. In total, 43 VRE isolates were obtained from various clinical sites throughout the years 2013-2014, including 40 vanA-type and 2 vanB-type vancomycin-resistant Enterococcus faecium isolates and 1 vanC1-type Enterococcus gallinarum. Of the 42 E. faecium, 19 isolates were subjected to whole genome sequencing. Core genome multilocus sequence typing (cgMLST) analysis revealed three sequence clusters (SCs) of clonally related isolates, which were linked to different hospital wards. The first two VRE isolates, isolated early 2013 from patients in the medical intensive care unit, were grouped in SC1 (MLST [ST] 78, vanB) and differed in only 3 of 1423 cgMLST alleles. The SC2 (n = 16, special care baby unit, neonatal intensive care unit, pediatric surgery ward, and oncology ward) and SC3 (n = 1, antenatal ward) were all ST80 vanA-VRE, but the single SC3 isolate differed in 233 alleles compared with SC2. Within SC2, isolates differed in 1-23 alleles. Comparison with a larger database of E. faecium strains indicated that all isolates clustered within the previously defined hospital clade A1. A combination of Resfinder and mlplasmid analysis identified the presence of resistance genes on different plasmid predicted genetic elements among different SCs. In conclusion, this study documents the first isolates causing outbreaks with VRE in the Libyan health care system. Further surveillance efforts using molecular typing methods to monitor spread of multidrug-resistant bacteria in the Libyan health care system are urgently needed.
Mohamed O. Ahmed, Et Al.(10-2020)
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